2. Type in the command prompt: \> java -classpath -Xmx[size] -Xms[size] [your main class name]
For example, if you want to enlarge the virtual memory to 256mb for your project phylotree (in which the main class file named PhyloTreeApp.java), the command should be:
\> java -classpath -Xmx256m -Xms256m PhyloTreeApp.java
Tips:
\>java -X : for the help
\>java -Xms
\>java -Xmx
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